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Apprendre Challenge: Sharing and Collaboration | Reproducible and Genomic-Style Analysis
R for Biologists and Bioinformatics (Core)

bookChallenge: Sharing and Collaboration

In biological research, sharing your analysis with collaborators is crucial for transparency, reproducibility, and advancing science. Organizing your R project, exporting analysis results, and preparing files for sharing ensures that others can follow your workflow, understand your findings, and build upon your work. As you prepare to collaborate, you'll need to structure your project directory, save key results in accessible formats, and gather all necessary files for easy transfer. This challenge will help you practice these essential skills and reinforce your understanding of reproducible and collaborative analysis in R.

Tâche

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Organize an R project, export analysis results, and prepare files for sharing with collaborators.

  • Create directories for data, results, scripts, and figures.
  • Save a sample data frame as a CSV file in the data directory.
  • Perform a simple analysis on the data and save the results as a CSV file in the results directory.
  • Save an R script in the scripts directory that reproduces the analysis.
  • Create a README file in the main project directory describing the project and its structure.
  • List all files in the project to confirm they are ready for sharing.

Solution

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Section 4. Chapitre 6
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bookChallenge: Sharing and Collaboration

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In biological research, sharing your analysis with collaborators is crucial for transparency, reproducibility, and advancing science. Organizing your R project, exporting analysis results, and preparing files for sharing ensures that others can follow your workflow, understand your findings, and build upon your work. As you prepare to collaborate, you'll need to structure your project directory, save key results in accessible formats, and gather all necessary files for easy transfer. This challenge will help you practice these essential skills and reinforce your understanding of reproducible and collaborative analysis in R.

Tâche

Swipe to start coding

Organize an R project, export analysis results, and prepare files for sharing with collaborators.

  • Create directories for data, results, scripts, and figures.
  • Save a sample data frame as a CSV file in the data directory.
  • Perform a simple analysis on the data and save the results as a CSV file in the results directory.
  • Save an R script in the scripts directory that reproduces the analysis.
  • Create a README file in the main project directory describing the project and its structure.
  • List all files in the project to confirm they are ready for sharing.

Solution

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Tout était clair ?

Comment pouvons-nous l'améliorer ?

Merci pour vos commentaires !

Section 4. Chapitre 6
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single

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